The Vitis vinifera sugar transporter gene family: phylogenetic overview and macroarray expression profiling
Identifieur interne : 000104 ( France/Analysis ); précédent : 000103; suivant : 000105The Vitis vinifera sugar transporter gene family: phylogenetic overview and macroarray expression profiling
Auteurs : Damien Afoufa-Bastien [France] ; Anna Medici [France] ; Julien Jeauffre [France] ; Pierre Coutos-Thévenot [France] ; Rémi Lemoine [France] ; Rossitza Atanassova [France] ; Maryse Laloi [France]Source :
- BMC Plant Biology [ 1471-2229 ] ; 2010.
Abstract
In higher plants, sugars are not only nutrients but also important signal molecules. They are distributed through the plant
In grapevine, one of the most economically important fruit crop in the world, it appeared that sucrose and monosaccharide transporter genes are present in 4 and 59 loci, respectively and that the monosaccharide transporter family can be divided into 7 subfamilies. Phylogenetic analysis of protein sequences has indicated that orthologs exist between
This study provides an exhaustive survey of sugar transporter genes in
Url:
DOI: 10.1186/1471-2229-10-245
PubMed: 21073695
PubMed Central: 3095327
Affiliations:
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PMC:3095327Le document en format XML
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LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author><author><name sortKey="Medici, Anna" sort="Medici, Anna" uniqKey="Medici A" first="Anna" last="Medici">Anna Medici</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author><author><name sortKey="Jeauffre, Julien" sort="Jeauffre, Julien" uniqKey="Jeauffre J" first="Julien" last="Jeauffre">Julien Jeauffre</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">UMR Génétique et Horticulture (GenHort) - INRA/INH/UA - BP 60057 - 49071 Beaucouzé cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR Génétique et Horticulture (GenHort) - INRA/INH/UA - BP 60057 - 49071 Beaucouzé cedex</wicri:regionArea></affiliation></author><author><name sortKey="Coutos Thevenot, Pierre" sort="Coutos Thevenot, Pierre" uniqKey="Coutos Thevenot P" first="Pierre" last="Coutos-Thévenot">Pierre Coutos-Thévenot</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author><author><name sortKey="Lemoine, Remi" sort="Lemoine, Remi" uniqKey="Lemoine R" first="Rémi" last="Lemoine">Rémi Lemoine</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author><author><name sortKey="Atanassova, Rossitza" sort="Atanassova, Rossitza" uniqKey="Atanassova R" first="Rossitza" last="Atanassova">Rossitza Atanassova</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author><author><name sortKey="Laloi, Maryse" sort="Laloi, Maryse" uniqKey="Laloi M" first="Maryse" last="Laloi">Maryse Laloi</name><affiliation wicri:level="3"><nlm:aff id="I1">UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR-CNRS-UP 6503 - LACCO - Laboratoire de Catalyse en Chimie Organique - Equipe Physiologie Moléculaire du Transport de Sucres - Université de Poitiers - Bâtiment Botanique - 40 Avenue du Recteur Pineau, 86022 Poitiers cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Poitou-Charentes</region><settlement type="city">Poitiers</settlement></placeName></affiliation></author></analytic><series><title level="j">BMC Plant Biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>In higher plants, sugars are not only nutrients but also important signal molecules. They are distributed through the plant <italic>via </italic>sugar transporters, which are involved not only in sugar long-distance transport <italic>via </italic>the loading and the unloading of the conducting complex, but also in sugar allocation into source and sink cells. The availability of the recently released grapevine genome sequence offers the opportunity to identify sucrose and monosaccharide transporter gene families in a woody species and to compare them with those of the herbaceous <italic>Arabidopsis thaliana </italic>using a phylogenetic analysis.</p></sec><sec><title>Results</title><p>In grapevine, one of the most economically important fruit crop in the world, it appeared that sucrose and monosaccharide transporter genes are present in 4 and 59 loci, respectively and that the monosaccharide transporter family can be divided into 7 subfamilies. Phylogenetic analysis of protein sequences has indicated that orthologs exist between <italic>Vitis </italic>and <italic>Arabidospis</italic>. A search for <italic>cis</italic>-regulatory elements in the promoter sequences of the most characterized transporter gene families (sucrose, hexoses and polyols transporters), has revealed that some of them might probably be regulated by sugars. To profile several genes simultaneously, we created a macroarray bearing cDNA fragments specific to 20 sugar transporter genes. This macroarray analysis has revealed that two hexose (<italic>VvHT1</italic>, <italic>VvHT3</italic>), one polyol (<italic>VvPMT5</italic>) and one sucrose (<italic>VvSUC27</italic>) transporter genes, are highly expressed in most vegetative organs. The expression of one hexose transporter (<italic>VvHT2</italic>) and two tonoplastic monosaccharide transporter (<italic>VvTMT1</italic>, <italic>VvTMT2</italic>) genes are regulated during berry development. Finally, three putative hexose transporter genes show a preferential organ specificity being highly expressed in seeds (<italic>VvHT3</italic>, <italic>VvHT5</italic>), in roots (<italic>VvHT2</italic>) or in mature leaves (<italic>VvHT5</italic>).</p></sec><sec><title>Conclusions</title><p>This study provides an exhaustive survey of sugar transporter genes in <italic>Vitis vinifera </italic>and revealed that sugar transporter gene families in this woody plant are strongly comparable to those of herbaceous species. Dedicated macroarrays have provided a <italic>Vitis </italic>sugar transporter genes expression profiling, which will likely contribute to understand their physiological functions in plant and berry development. The present results might also have a significant impact on our knowledge on plant sugar transporters.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Lemoine, R" uniqKey="Lemoine R">R Lemoine</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Buttner, M" uniqKey="Buttner M">M Buttner</name></author><author><name sortKey="Sauer, N" uniqKey="Sauer N">N Sauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zimmermann, Mh" uniqKey="Zimmermann M">MH Zimmermann</name></author><author><name sortKey="Ziegler" uniqKey="Ziegler">Ziegler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Weber, A" uniqKey="Weber A">A Weber</name></author><author><name sortKey="Servaites, Jc" uniqKey="Servaites J">JC Servaites</name></author><author><name sortKey="Geiger, Dr" uniqKey="Geiger D">DR Geiger</name></author><author><name sortKey="Kofler, H" uniqKey="Kofler H">H Kofler</name></author><author><name sortKey="Hille, D" uniqKey="Hille D">D Hille</name></author><author><name sortKey="Groner, F" uniqKey="Groner F">F Groner</name></author><author><name sortKey="Hebbeker, U" uniqKey="Hebbeker U">U Hebbeker</name></author><author><name sortKey="Flugge, Ui" uniqKey="Flugge U">UI Flugge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Martinoia, E" uniqKey="Martinoia E">E Martinoia</name></author><author><name sortKey="Massonneau, A" uniqKey="Massonneau A">A Massonneau</name></author><author><name sortKey="Frangne, N" uniqKey="Frangne N">N Frangne</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Hx" uniqKey="Wang H">HX Wang</name></author><author><name sortKey="Weerasinghe, Rr" uniqKey="Weerasinghe R">RR Weerasinghe</name></author><author><name sortKey="Perdue, Td" uniqKey="Perdue T">TD Perdue</name></author><author><name sortKey="Cakmakci, Ng" uniqKey="Cakmakci N">NG Cakmakci</name></author><author><name sortKey="Taylor, Jp" uniqKey="Taylor J">JP Taylor</name></author><author><name sortKey="Marzluff, Wf" uniqKey="Marzluff W">WF Marzluff</name></author><author><name sortKey="Jones, Am" uniqKey="Jones A">AM Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuhn, C" uniqKey="Kuhn C">C Kuhn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sauer, N" uniqKey="Sauer N">N Sauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuhn, C" uniqKey="Kuhn C">C Kuhn</name></author><author><name sortKey="Grof, Cp" uniqKey="Grof C">CP Grof</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Buttner, M" uniqKey="Buttner M">M Buttner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Noiraud, N" uniqKey="Noiraud N">N Noiraud</name></author><author><name 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uniqKey="Gibeaut D">DM Gibeaut</name></author><author><name sortKey="Hulett, J" uniqKey="Hulett J">J Hulett</name></author><author><name sortKey="Cramer, Gr" uniqKey="Cramer G">GR Cramer</name></author><author><name sortKey="Seemann, Jr" uniqKey="Seemann J">JR Seemann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Valtaud, C" uniqKey="Valtaud C">C Valtaud</name></author><author><name sortKey="Foyer, Ch" uniqKey="Foyer C">CH Foyer</name></author><author><name sortKey="Fleurat Lessard, P" uniqKey="Fleurat Lessard P">P Fleurat-Lessard</name></author><author><name sortKey="Bourbouloux, A" uniqKey="Bourbouloux A">A Bourbouloux</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>France</li></country><region><li>Nouvelle-Aquitaine</li><li>Poitou-Charentes</li></region><settlement><li>Poitiers</li></settlement></list><tree><country name="France"><region name="Nouvelle-Aquitaine"><name sortKey="Afoufa Bastien, Damien" sort="Afoufa Bastien, Damien" uniqKey="Afoufa Bastien D" first="Damien" last="Afoufa-Bastien">Damien Afoufa-Bastien</name></region><name sortKey="Atanassova, Rossitza" sort="Atanassova, Rossitza" uniqKey="Atanassova R" first="Rossitza" last="Atanassova">Rossitza Atanassova</name><name sortKey="Coutos Thevenot, Pierre" sort="Coutos Thevenot, Pierre" uniqKey="Coutos Thevenot P" first="Pierre" last="Coutos-Thévenot">Pierre Coutos-Thévenot</name><name sortKey="Jeauffre, Julien" sort="Jeauffre, Julien" uniqKey="Jeauffre J" first="Julien" last="Jeauffre">Julien Jeauffre</name><name sortKey="Jeauffre, Julien" sort="Jeauffre, Julien" uniqKey="Jeauffre J" first="Julien" last="Jeauffre">Julien Jeauffre</name><name sortKey="Laloi, Maryse" sort="Laloi, Maryse" uniqKey="Laloi M" first="Maryse" last="Laloi">Maryse Laloi</name><name sortKey="Lemoine, Remi" sort="Lemoine, Remi" uniqKey="Lemoine R" first="Rémi" last="Lemoine">Rémi Lemoine</name><name sortKey="Medici, Anna" sort="Medici, Anna" uniqKey="Medici A" first="Anna" last="Medici">Anna Medici</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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